This workshop will show the most common functions used during differential expression analysis and how to automatize into the analysis with a template.
| Audience | Computational skills required | Duration |
|---|---|---|
| Biologists | Beginner/Intermediate R | 3-hour workshop (~3 hours of trainer-led time) |
PILMBC requirements:
| Lessons | Estimated Duration |
|---|---|
| Setting up | 15 min |
| Load Data | 30 min |
| Differential Expression report | 60 min |
| Automatize reports | 30 min |
All the files used for the above lessons are linked within, but can also be accessed here. Download the full project to start.
Download the most recent versions of R and RStudio for your laptop:
Install the required R packages by running the following code in RStudio:
install.packages("devtools")
download.file("https://raw.githubusercontent.com/pilm-bioinformatics/templates-rmd-de/master/config/install.R", "install.R")
source("install.R")These materials have been developed by members of the teaching team at the PILM - MIT Bioinformatics Core (PILMBC). These are open access materials distributed under the terms of the Creative Commons Attribution license (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.