Chapter 2

You will learn to run a test data in your local computer.

The test data contains:

Inputs:

  • 4 files from SCerevisiae
  • genome FASTA
  • genes GTF
  • metadata (Optional)

Outputs:

  • QC metrics and expression files
  • execution report
  • execution timeline

Summary

  • Run a test pipeline within a docker container
  • Run a test pipeline in Open Mind